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iDEP (integrated Differential Expression and Pathway analysis) seamlessly connects 63 R/Bioconductor packages, 2 web services, and comprehensive annotation and pathway databases for 220 plant and animal species. The workflow can be reproduced by downloading customized R code and related pathway files. As an example, we analyzed an RNA-Seq.
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All new iDEP 1.1 released in testing mode on April 25, 2023. The new version includes both software and database updates. With Ensembl 107 and STRING-db 11.5, our database now has annotation for 14,000 species! If this server is busy, try our mirror site (faster) for iDEP 0.96, and iDEP 1.1.
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Paku merupakan salah satu bahan pendukung produksi dalam dunia industri kayu yang fungsinya untuk menyambung kayu yang sifatnya permanen dan sementara. Paku umumnya terdapat banyak jenis dan ukurannya, serta fungsinya juga berbeda-beda. Selain digunakan pada kayu ada juga yang difungsikan untuk tembok. Paku juga dapat dijual per packed, bijian.
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An ANOVA is conducted by iDEP and if P<0.01, a warning is produced. This presents a confounding factor. iDEP also calculates the ratio of the max/min total counts among groups. It is believed that as long as the ratio is within 1.5, it should be acceptable. See this discussion on Twitter .
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