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Models generated with AlphaLink using experimental restraints can be published as integrative/hybrid models in PDB-Dev PDB-Dev using the make_ihm.py script which requires python-ihm.. The script takes the chain_id_map.json file, the crosslink pickle, a mmcif file generated from the .pdb output of AlphaLink2 and the accession code for the deposited data (e.g., PRIDE) as input.
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05 July 2022 06:23. Alpha Link User Manual. Alpha Link Installation Manual.